Christopher C Mader



[tab:Summary]

Director

Christopher Mader joined the University of Miami Center for Computational Science in 2007 as Director of the Software Engineering core. Mr. Mader has been developing software systems for scientific applications, and leading development teams for over 15 years at a number of research organizations including: Stanford University, The Institute for Genomic Research and The Scripps Research Institute, as well as a variety of commercial organizations. His interests include the development of service-oriented architectures and text mining.

[tab:Publications]
  1. Brown, C. Hendricks; Mohr, David C.; Gallo, Carlos G.; Mader, Christopher; Palinkas, Lawrence; Wingood, Gina; Prado, Guillermo; Kellam, Sheppard G.; Pantin, Hilda; Poduska, Jeanne; Gibbons, Robert; McManus, John; Ogihara, Mitsunori; Valente, Thomas; Wulczyn, Fred; Czaja, Sara; Sutcliffe, Geoff; Villamar, Juan; Jacobs, Christopher. “A Computational Future for Preventing HIV in Minority Communities: How Advanced Technology Can Improve Implementation of Effective Programs.” JAIDS Journal of Acquired Immune Deficiency Syndromes. 63():S72-S84, June 1, 2013.doi: 10.1097/QAI.0b013e31829372bd. Article.
  2. Vempati, U; Visser, U.; Abeyruwan, S; Sakurai, K.; Przydzial, M.; Chung, C.; Smith, R.; Koleti, A; Mader, C.; Lemmon, V.; Schürer, S. “BioAssay Ontology to describe high-throughput screening assays and their results” Proceedings of the International Conference on Biomedical Ontology (ICBO), 2011, in press.
  3. Schröter T, Minond D, Weiser A, Dao C, Habel J, Spicer T, Chase P, Baillargeon P, Scampavia L, Schürer S, Chung C, Mader C, Southern M, Tsinoremas N, LoGrasso P, Hodder P.  “Comparison of miniaturized time-resolved fluorescence resonance energy transfer and enzyme-coupled luciferase high-throughput screening assays to discover inhibitors of Rho-kinase II (ROCK-II).” J Biomol Screen. 2008 Jan;13(1):17-28  <http://www.ncbi.nlm.nih.gov/pubmed/18227223?ordinalpos=1&itool= EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum>     mouse using cross-species approach. Pacific Symposium Biocomput. 2004:42-53.
  4. BD Pascal, MJ Chalmers, SA Busby, CC Mader, MR Southern, NF Tsinoremas, and P. R. Griffin. 2007 “The Deuterator: Software for the determination of backbone amide deuterium levels from H/D exchange MS data.” BMC Bioinformatics. 8:156p.
  5. AC Cervino, A Darvasi, M Fallahi, CC Mader, NF Tsinoremas. 2006.“An integrated insilico gene mapping strategy in inbred mice.” Genetics.
  6. AC Cervino, M Gosink, M Fallahi, B Pascal, C Mader, NF Tsinoremas.2006.“A comprehensive mouse IBD database for the efficient location of quantitative trait loci.” Mammalian Genome.
  7. Stewart, E.A., K. B. McKusick, Aggarwal A, Bajorek E, Brady S, Chu A, Fang N, Hadley D, Harris M, Hussain S, Lee R, Maratukulam A, O’Connor K, Perkins S, Piercy M, Qin F, Reif T, Sanders C, She X, Sun WL, Tabar P, Voyticky S, Cowles S, Fan JB, Mader C, Quackenbush J, Myers RM, Cox DR. 1997.“An STS-Based radiation hybrid map of the human genome.” Genome Research 7:422-433.
  8. “A gene map of the human genome.” Science 29:540-546.
  9. Schuller, GD, M. S. Boguski, E. A. Stewart, L. D. Stein, G. Gyapay, K. Rice, R. E. White, P. Rodriguez-Tomé, A. Aggarwal, E. Bajorek, S. Bentolila, B. B. Birren, A. Butler, A. B. Castle, N. Chiannilkulchai, A. Chu, C. Clee, S. Cowles, P. J. R. Day, T. Dibling, N. Drouot, I. Dunham, S. Duprat, C. East, C. Edwards, J.-B. Fan, N. Fang, C. Fizames, C. Garrett, L. Green, D. Hadley, M. Harris, P. Harrison, S. Brady, A. Hicks, E. Holloway, L. Hui, S. Hussain, C. Louis-Dit-Sully, J. Ma, A. MacGilvery, C. Mader, A. Maratukulam, T. C. Matise, K. B. McKusick, J. Morissette, A. Mungall, D. Muselet, H. C. Nusbaum, D. C. Page, A. Peck, S. Perkins, M. Piercy, F. Qin, J. Quackenbush, S. Ranby, T. Reif, S. Rozen, C. Sanders, X. She, J. Silva, D. K. Slonim, C. Soderlund, W.-L. Sun, P. Tabar, T. Thangarajah, N. Vega-Czarny, D. Vollrath, S. Voyticky, T. Wilmer, X. Wu, M. D. Adams, C. Auffray, N. A. R. Walter, R. Brandon, A. Dehejia, P. N. Goodfellow, R. Houlgatte, J. R. Hudson Jr., S. E. Ide, K. R. Iorio, W. Y. Lee, N. Seki, T. Nagase, K. Ishikawa, N. Nomura, C. Phillips, M. H. Polymeropoulos, M. Sandusky, K. Schmitt, R. Berry, K. Swanson, R. Torres, J. C. Venter, J. M. Sikela, J. S. Beckmann, J. Weissenbach, R. M. Myers, D. R. Cox, M. R. James, D. Bentley, P. Deloukas, E. S. Lander, T. J. Hudson. 1996.
CCS
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