Publications

2013

  • E. Capobianco (2013) Protein Networks Tomography. Targeting Cancer and Associated Morbidities. Systems Biomedicine. In press.
  • M. Orsini, A. Travaglione, E. Capobianco (2013) Cancer Markers: Integratively Annotated Classification. Gene, accepted.
  • Capobianco, E., (2013) Multiscale fragPIN Modularity. ISRN Genomics, Art 307608.
  • El Baroudi, M., La Sala, D., Cinti, C., Capobianco E. “DAC-driven Integrative Network Regulation and Pathway Coordination in Breast Cancer”, IWBBIO 2013 (International Work-Conference on Bioinformatics and Biomedical Engineering), Granada, 18-20 March 2013, pg413
  • Orsini, M. and Capobianco, E. (2013) MiRWare: A MiRNA-mRNA warehouse for inference on cancer regulation. MicroRNA. Accepted for publication
  • Orsini, M., Travaglione, A., and Capobianco, E. Warehousing Re-annotated Cancer Genes for Biomarker Meta-analysis. Computer Methods and Programs in Biomedicine: Volume 111, Issue 1, July 2013, Pgs. 166-180
  • Han H, Bourboulia D, Jensen-Taubman S, Issac B, Wei B and Stetler-Stevenson WG (2013), An endogenous inhibitor of angiogenesis inversely correlates with side population phenotype and function in human lung cancer cells. (Accepted for publication in Oncogene (NPG))
  • Comparative analysis of genome sequences from four strains of the Buchnera aphidicola Mp endosymbiont of the green peach aphid, Myzus persicae, BMC Genomics. Zhijie Jiang, Derek H. Jones, Sawsan Khuri,  Nicholas F. Tsinoremas, Tania Wyss, Georg Jander, Alex C. C. Wilson. Accepted.

2012

  • Wierenga KJ, Jiang Z, Yang AC, Mulvihill JJ, Tsinoremas NF. A clinical evaluation tool for SNP arrays, especially for autosomal recessive conditions in offspring of consanguineous parents. Genet Med. 2012 Oct 25. doi: 10.1038/gim.2012.136. PMID: 23100014
  • Capobianco, E., (2012) Constrained Network Modularity. ISRN Biomathematics, Art 192031.
  • Capobianco, E., (2012) Ten challenges for Systems Medicine. Frontiers in Genetics (sect Statistical Genetics and Methodology), 3, Art 193.
  • Capobianco, E., (2012) Dynamic Networks in Systems Medicine. Frontiers in Genetics (sect Bioinformatics and Computational Biology), 3, Art 185
  • Capobianco, E., Travaglione, A., Marras, E. (2012) Modularity Configurations in Biological Networks with Embedded Dynamics.Invited Book chapter in ‘Statistical and Machine Learning Approaches for Network Analysis’. M. Dehmer and SC Basak (Eds.), Wiley, NJ USA, pg 109-129.
  •  Bourboulia D, Han H, Jensen-Taubman S, Gavil N, Issac B,  Wei B, Neckers L, and Stetler-Stevenson WG (2013) TIMP-2 modulates cancer cell transcription profile and enhances E-cadherin/beta-catenin complex expression in A549 lung cancer cells.  Oncotarget, (Advance Publications 2012)
  •  Johnson S, Issac B, Zhao S, Bisht M, Celiku O, Tofilon P, Camphausen K and Shankavaram U (2012), StRAP: an integrated resource for profiling high-throughput cancer genomic data from stress response studies. PLoS ONE 7(12):e51693. PMID: 23284744
  •  Wierenga, K.J., Jiang, Z., Yang, A., Mulvihill, J.J. Tsinoremas, N.F. “A clinicalevaluation tool for SNP arrays, especially for autosomal recessive conditions in offspring of consanguinity” Genetics in Medicine. 2012 Oct. 25 doi:10.1038/gim.2012.136
  • Winters, K.A., Jiang, Z., Xu, W., Li, S., Ammous, Z., Jayakar, P., Wierenga, K.J. “Re-assigned Diagnosis of D4ST1-Deficient Ehlers-Danlos syndrome (Adducted Thumb-Clubfoot Syndrome) After Initial Diagnosis of Marden-Walker Syndrome” Am. J. Med. Genet. 2012 Sep. 14 doi:10.1002/ajmg.a.35613
  • Jing, Y., Kovacs, K., Kurisetty, V., Jiang, Z., Tsinoremas, N., Merchan, J.R. “Role of Plasminogen Activator Inhibitor-1 in Urokinase?s Paradoxical In vivo Tumor suppressing or Promoting Effects” Mol. Cancer Res. 2012 Aug. 21 doi:10.1158/15141-7786.MCR-12-0145
  • Bravo-Egana, V., Rosero, S., Klein, D., Jiang, Z., Vargas, N., Tsinoremas, N., Doni, M., Podetta, M., Ricordi, C., Molano, R.D., Pileggi, A., Pastori, R.L. “Inflammation-Mediated Regulation of MicroRNA Expression in Transplanted Pancreatic Islets” Journal of Transplantation, Vol. 2012, Article ID 723614, 15 pages, 2012. doi:10.1155/2012/723614